Issues in estimating rates of paediatric CFS & ME

Research abstract:

Background: There is a need to examine the prevalence of pediatric chronic fatigue syndrome (CFS) and Myalgic Encephalomyelitis (ME) in the general community, as well as the relative frequency of CFS and ME among various groups (e.g., different age groups, genders, racial/ethnic groups, and socioeconomic strata) and to compare these individuals with community controls.

Objectives: In the present study, we describe an ongoing NIH-funded study which will answer basic epidemiologic pediatric issues for pediatric CFS and ME.

Materials and Methods: We used a multiple-stage design, beginning with a brief screening for CFS- and ME-like symptomatology, followed by a more rigorous medical and psychiatric diagnostic evaluation.

Results: We provide two case studies showing the types of data we are collecting, and how the data are being used to inform diagnostic decisions.

Conclusions: Our methods will allow us to determine the prevalence of pediatric CFS and ME status in the general community.

Issues in estimating rates of pediatric Chronic Fatigue Syndrome and Myalgic Encephalomyelitis in a community-based sample, by Leonard A. Jason; Ben Z. Katz; Cynthia Mears; Rachel Jantke; Abby Brown; Madison Sunnquist ; and Kelly O’Connor in Avicenna Journal of Neuro Psych Physiology. 2(4): e37281 Nov 21, 2015

 

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A proposal for treatment of harmful auto-antibodies in auto-immune disorders

Research abstract:

The hypothesis proposed is that functional disorders, such as irritable bowel syndrome, chronic fatigue syndrome and anorexia nervosa are caused by auto-antibodies to neuronal proteins induced by molecular mimicry with microbial antigens.

The age incidence of these conditions, the marked female excess, increase with economic and technological advance, precipitation by infection, and the paucity of histological changes are all consistent with the hypothesis.

It can be tested directly using human sera to search for cross reaction with brain proteins in model systems such as Drosophila melanogaster. The conditions might be amenable to treatment using pooled immunoglobulin.

Identification and elimination from the microbial flora of the bacteria that express the cross reacting antigens should be possible.

Microbes, molecular mimicry and molecules of mood and motivation by J.A. Morris, S.J. Broughton, Q. Wessels in Medical Hypotheses 87 (2016) 40–43 [ accepted 15 Dec 2015]

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Changes to genes found in IBS

Research abstract:

Background: Irritable bowel syndrome (IBS) is a stress-sensitive disorder. Environmental factors including stress can trigger epigenetic changes, which have not been well-studied in IBS.

We performed a pilot study investigating genome-wide DNA methylation of IBS patients and healthy controls (HCs) to identify potential epigenetic markers and associated pathways. Additionally, we investigated relationships of epigenetic changes in selected genes with clinical traits.

Methods: Twenty-seven IBS patients (59% women; 10 IBS-diarrhea, 8 IBS-constipation, 9 IBS-mixed) and 23 age- and sex-matched HCs were examined. DNA methylation from peripheral blood mononuclear cells  (PBMCs) was measured using HM450 BeadChip, and representative methylation differences were confirmed by bisulphite sequencing.

Gene expression was measured using quantitative PCR. Gastrointestinal (GI) and non-GI symptoms were measured using validated questionnaires.  Associations were tested using non-parametric methods.

Key Results: Genome-wide DNA methylation profiling of IBS patients compared with HCs identified 133 differentially methylated positions (DMPs) (mean difference ≥10%; p < 0.05). These genes were associated with gene ontology terms including glutathione metabolism related to oxidative stress and neuropeptide hormone activity. Validation by sequencing confirmed differential methylation of subcommissural organ (SCO)-Spondin (SSPO), glutathione-S-transferases mu 5 (GSTM5), and tubulin polymerization promoting protein genes.

Methylation of two promoter CpGs in GSTM5 was associated with epigenetic silencing.  Epigenetic changes in SSPO gene were positively correlated with hospital anxiety and depression scores in IBS patients (r > 0.4 and false discovery rate <0.05).

Conclusions & Inferences: This study is the first to comprehensively explore the methylome of IBS patients. We identified DMPs in novel candidate genes which could provide new insights into disease mechanisms; however, these preliminary findings warrant confirmation in larger, independent studies.

Genome-wide DNA methylation profiling of peripheral blood mononuclear cells in irritable bowel syndrome, by S. Mahurkar, C. Polytarchou, D. Iliopoulos, C. Pothoulakis, E.A. Mayer and L. Chang in Neurogastroenterology & Motility [Article first published online: 16 DEC 2015]

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Exercise triggers gut changes comment by Cort Johnson

Cort Johnson comments on recent research: Exercise triggers gut changes in Chronic Fatigue Syndrome (ME/CFS) December 21 2015

It seems every week brings more news highlighting the surprising importance the gut has on our health.

A couple of years ago the Solve ME/CFS Initiative funded a pilot study on the effects of exercise on chronic fatigue syndrome (ME/CFS) patients gut flora. It was one of those multi-faceted studies that Suzanne Vernon loved funding. There was an exercise component, a gut component, a blood and stool component and a time component. It took quite a while to get published, but here it is.

PLoS One. 2015 Dec 18;10(12):e0145453. doi: 10.1371/journal.pone.0145453.Changes in Gut and Plasma Microbiome following Exercise Challenge in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS). Shukla SK1, Cook D2,3, Meyer J2, Vernon SD4, Le T1, Clevidence D3, Robertson CE5, Schrodi SJ1, Yale S6, Frank DN5.

In this small (n=20) study they first examined the gut flora (stool sample) and the bacterial component of the blood. Then they had people with chronic fatigue syndrome (ME/CFS) and healthy control participants pedal themselves into exhaustion on a bicycle. Then 15, 48 and 72 hours after the bicycle test, stool and blood samples were taken again.

The idea was to get at a possible cause of post-exertional malaise. The study was driven by findings suggesting that the gut flora can be dramatically effected by exercise. The flora of the gut is so responsive to exercise that one review paper suggested that it “acts as an endocrine organ and is sensitive to the homeostatic and physiological changes associated with exercise.”

In healthy people exercise appears to improve their health by enhancing the diversity of their gut flora. Could the gut flora/exercise interaction be a double-edged sword, though? Could exercise trigger changes in the gut that produce exhaustion instead of health? In particular, could it cause gut microbes to spill into the blood – setting off a devastating immune response causing fatigue, pain, cognitive problems and other symptoms in ME/CFS.

Let’s see what they found:

Results

These findings suggest a role for an altered gut microbiome and increased bacterial translocation following exercise in ME/CFS patients that may account for the profound post-exertional malaise experienced by ME/CFS patients. The Authors

It’s important to note first, that gut symptoms were not, repeat not, required for this study. The patients in the study reported few gut symptoms. The gut, it turns out, can be severely impaired without generating many symptoms, or it can produce dramatic symptoms without it being severely impaired. Both celiac disease and non-celiac gluten hypersensitivity, for instance, can exist without significant gut symptoms being present.

Heart Rate – A Slight Digression

Except for heart rate (which was reduced) the VO2 max and other measures were similar between the healthy controls and the ME/CFS patients.  An inability to ramp up heart rate to normal levels during exercise is called chronotropic incompetence (CI). While not as well-known as the reductions in VO2 max CI has been found ME/CFS – and it is associated with “exercise intolerance” in other diseases.

A 2011 review indicated that CI “produces exercise intolerance which impairs quality-of-life, and is an independent predictor of major adverse cardiovascular events and overall mortality” (ouch). CI appears to be caused by sympathetic/parasympathetic nervous system problems.

Gut Flora

The study suggested that exercise may have major, even outsized effects on the gut flora in ME/CFS. Instead of being less responsive to exercise, the gut flora in ME/CFS was significantly more responsive to exercise than that of the healthy controls. Exercise increased the abundance of 6/9 of the gut phyla in the ME/CFS patients but only 2/9 major phyla of the healthy controls. The gut bacteria had bloomed in the ME/CFS patients.

Suzanne Vernon said they didn’t know why exercise was causing the bacteria to grow so much in the ME/CFS patients but likened it to a “bacterial bloom.”

I hypothesize that it is akin to a “bacterial bloom” that is not healthy and potentially contributing to increased inflammation and other problems that occur when something (in this case bacterial growth) happens too fast and furious throwing the balance off. Suzanne Vernon

The increased abundance of bacteria in the stools of ME/CFS patients was reflected in their blood. Fifteen minutes after exercise species of Clostridium bacteria popped up in the blood of ME/CFS patients. Bacilli bacteria showed up at the 48-hour mark. While most bacterial loads declined in the blood of the healthy controls, they remained high in the ME/CFS patients three days after the exercise.

Clostridium are obligate anaerobes that thrive in oxygen-poor environments. Five species including C. botulinum, C. tetanus, and C. dificile cause the most severe problems in humans, but many others are involved in gut health. Suzanne Vernon said that the Clostridium complexes that showed up in the study were important regulators of gut health.

Some translocation from the gut to the blood occurs even in the healthy people, but it occurred to a greater degree in the ME/CFS patients in this study. The findings suggested that exercise was, either by altering the gut flora or by some other means, compromising the integrity of ME/CFS patients gut lining. Once the gut bacteria escaped into the blood, it was sure to be attacked by the immune system.

Maes may have been the first ME/CFS researcher to glom onto this potential problem. His 2008 study described what was at that time a “novel pathway” of ME/CFS causation: weakened gut junction barriers allowing/allowed the escape of gut materials into the blood.

Finding evidence of increased immune responses (IgA/IgM) to those gut materials Maes had his ME/CFS patients embark on a year-long leaky gut diet and anti-inflammatory supplements program containing glutamine, N-acetyl cysteine and zinc. The diet/supplements reduced the levels of the pro-inflammatory factors in their blood and many patients improved.

Maes later showed that immune responses to gut material that leaks into the blood can cause depression, and in ME/CFS are associated with increased symptoms. He recently produced a grand schema that proposes that many factors including gut bacterial translocation underpin a wide variety what he calls inflammatory and oxidative and nitrosative stress disorders including depression, inflammatory bowel disease (and ME/CFS).

Given the increased abundance of Firmicutes species found in ME/CFS in this study, it’s intriguing that Rifaximin, an antibiotic sometimes used in irritable bowel syndrome (IBS) preferentially reduces Firmicutes species including Clostridium sp.

Anecdotally, some ME/CFS patients have reported remarkable mood and other changes after altering their gut flora. Esther was able to go off her antidepressants, cut out Xanax and Ambien, half her dose of Trazodone, and say goodbye to her shrink after Rifaximin treatment for some gut problems.
From the Gut to the Brain: Esther’s Amazing Chronic Fatigue Syndrome Xifaxin Story

I asked Suzanne if she’d had any expectations what the study would find.  She didn’t know what to expect with this study – except that she expected to find something. The gut is so large and complex, and there is so much we don’t know that it was impossible for her to predict what they might find.

The fact, though, that they were able to detect significant changes with such a small sample set (10 patients and ten healthy controls) was “pretty exciting” to her, and indicates that the microbiome might indeed be very important in ME/CFS.

Has Shukla or is Shukla trying for an NIH grant using the findings? She said he did submit a grant proposal in 2010 or 2011 which was not rewarded but hoped that with these “exciting results” and the recent NIH promise of more research funding that Shukla would try again and be successful.

She noted that larger studies able to pinpoint individual species and determine microbial diversity are greatly needed. We are just at the beginning of learning what is happening in the guts of ME/CFS patients –

There are many unknowns with the gut microbiome in ME/CFS, and so there is a lot of room for well-designed scientific exploration of the gut microbiome. As my friends (who also happen to be patients remind me) remind me the most important research for them is the kind that is going to bring treatment sooner rather than later. Suzanne Vernon

The authors noted that gut flora manipulation including probiotics, prebiotics, dietary fiber, and fecal microbiota transplantation has proven helpful in  “other chronic, inflammatory, non-communicable diseases.”

Much more clearly needs to be done. This study was too small to be able to pluck out individual species or to assess the abundance of groups of rarer phyla. It was a pilot study; a preliminary look at the effects of exercise on the guts of ME/CFS patients, but it did suggest that something different is happening and that something is showing up in their blood as well. Hopefully it will translate into a larger study or studies.

In the meantime you can add the gut to a growing list of systems (cardiovascular, immune, nervous system) studies indicate are effected by exercise in ME/CFS.

We are a long, long way from understanding the role the gut plays in ME/CFS. The initial findings are, however, promising. At least five gut studies are currently underway in ME/CFS: two (maybe three) by Dr’s Lipkin and Hornig, a Maureen Hanson study, the UK’s ME/CFS microbiota project and the Open Medicine Foundation’s severely ill study.

Hanson’s NIH funded gut study hasn’t gotten much press but it’s impressive, has been underway for awhile and may be finishing up soon. It won’t have an exercise component but it looks like Hanson’s study may be able to identify the individual species in the gut. The study will determine the bacterial diversity and composition of the gut flora in ME/CFS patients and healthy controls. She’s working with Dr. Susan Levine and an experienced gut researcher, Dr. Ruth Ley.

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Abnormal killer T cells found in CFS/ME and MS

Research abstract:

Background: CD8+ T cells have putative roles in the regulation of adaptive immune responses during infection. The purpose of this paper is to compare the status of CD8+ T cells in Multiple Sclerosis (MS) and Chronic Fatigue Syndrome/ Myalgic Encephalomyelitis (CFS/ME).

Methods:  This preliminary investigation comprised 23 CFS/ME patients, 11 untreated MS patients, and 30 nonfatigued controls. Whole blood samples were collected from participants, stained with monoclonal antibodies, and analysed on the flow cytometer.

Using the following CD markers, CD27 and CD45RA (CD45 exon isoform 4), CD8+ T cells were divided into naïve, central memory (CM), effector memory CD45RA− (EM), and effector memory CD45RA+ (EMRA) cells.

Results: Surface expressions of BTLA, CD127, and CD49/CD29 were increased on subsets of CD8+ T cells from MS patients. In the CFS/ME patients CD127 was significantly decreased on all subsets of CD8+ T cells in comparison to the nonfatigued controls. PSGL-1 was significantly reduced in the CFS/ME patients in comparison to the nonfatigued controls.

Conclusions: The results suggest significant deficits in the expression of receptors and adhesion molecules on subsets of CD8+ T cells in both MS and CFS/ME patients. These deficits reported may contribute to the pathogenesis of these diseases. However, larger sample size is warranted to confirm and support these encouraging preliminary findings.

A Preliminary Comparative Assessment of the Role of CD8+ T Cells in Chronic Fatigue Syndrome/Myalgic Encephalomyelitis and Multiple Sclerosis, by Ekua W. Brenu, Simon Broadley, Thao Nguyen, Samantha Johnston, Sandra Ramos, Don Staines, and Sonya Marshall-Gradisnik in Journal of Immunology Research, Vol 2016 Article ID 9064529, 8 pages

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Support for the microgenderome in ME/CFS

Research abstract:

The ‘microgenderome’ provides a paradigm shift that highlights the role of sex differences in the host-microbiota interaction relevant for autoimmune and neuro-immune conditions.

Analysis of cross-sectional self-report and faecal microbial data from 274 patients with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) suggests that commensal gut microorganisms may play both protective and deleterious roles in symptom expression. Results revealed significant sex-specific interactions between Firmicutes (Clostridium, Streptococcus, Lactobacillus and Enterococcus) and ME/CFS symptoms (including neurological, immune and mood symptoms), regardless of compositional similarity in microbial levels across the sexes.

Extending animal studies, we provide support for the microgenderome in a human clinical population. Applied and mechanistic research needs to consider sex-interactions when examining the composition and function of human microbiota.

Support for the microgenderome: associations in a human clinical population, by Amy Wallis, Henry Butt, Michelle Ball, Donald P. Lewis & Dorothy Bruck in Scientific Reports 6, Article number: 19171 (2016) [Published online:13 January 2016]

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Dr Sarah Myhill interview: energy and mitochondrial function

Niki Gratrix interviews Dr Sarah Myhill, published on 6 Oct 2015

Covered in this interview from the Abundant Energy Summit: rebooting Mitochondrial Function and nutrient status for optimum energy.  Lasts 40 minutes with powerpoint slides.

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Dr Ian Lipkin says 3-5 years to solve ME/CFS

Cort Johnson reports: Ian Lipkin: Three to Five Years* to Solve Chronic Fatigue Syndrome (ME/CFS)  December 26, 2015

Ian Lipkin flew to Lake Tahoe this December to fundraise for joint projects with Simmaron Research Foundation. In a talk covering his virus hunting career, the threat of pathogens to humanity, and his work with chronic fatigue syndrome (ME/CFS), he dropped a bombshell:  he stated that he believes it’s possible to solve ME/CFS in three to five years.

On that hopeful note, let’s learn more about Dr. Lipkin, his work, and his collaborations with Simmaron.

Dr. Peterson’s Introduction

Lipkin’s Columbia Center for Infection and Immunity (CII) has established close ties with the Simmaron Research Foundation. Only a couple of months before, his chief collaborator, Mady Hornig (and Simmaron Scientific Advisory Board member) had given a talk.  Now Ian Lipkin was here.

Tea-Time at Simmaron I: Mady Hornig on the “Peterson Subsets”, Immune Exhaustion and New Gut Findings In ME/CFS

Dr. Peterson started his introduction of Ian Lipkin by noting that he’d known him since they crossed paths in the 1980’s when Dr. Peterson sent him patients suffering from HIV/AIDS.

Ian Lipkin was the first to isolate Borna disease virus. He identified the West Nile Virus, developed technologies to identify SARS and then hand carried 10,000 test kits to Beijing at the height of the outbreak. He most recently discovered a highly dangerous virus that recently jumped into humans called MERS (Middle Eastern Respiratory Syndrome Coronavirus).

Lipkin has pioneered many technological breakthroughs in finding pathogens including the use of MassTag-PCR, the GreeneChip Diagnostic, and High Throughput Sequencing. His latest breakthrough is the development of a new screening technique that enhances researchers ability to find viruses 10,000 fold.

Called the top virus hunter in the world, Ian Lipkin runs the Center for Infection and Immunity at Columbia, and is the director of the Center for Research in Diagnostics and Discovery (CRDD) at the NIH. He also worked closely with Steven Soderbergh on his film Contagion.

Ian Lipkin talks

Who says brilliant scientists can’t be a hoot to listen to as well?
Ian Lipkin’s presentation was both enlightening and at times hilarious. Exhibiting a wry sense of humor, Lipkin poked fun at himself and virtually everyone around him.

The last time he was in Lake Tahoe, he said, was in 1984 and he hearkened back to the HIV/AIDS patients Dr. Peterson sent him in the early 1980’s.

“When you come to a fork in the road – take it!”

He stated the guiding principle in the search for pathogens could be summed up by the great Yogi Berra’s adage “When you come to a fork in the road – take it!”.

HIV/AIDS was the beginning of many changes. Even after the medical community knew it was being passed in the blood it still took them 2 1/2 years to find it. Why did they know a pathogen was present?  Because of the infectious nature of the spread of the disease and the cytokine abnormalities found.

In a Discover interview,  Lipkin noted that he ran the first clinic in San Francisco that would treat HIV/AIDS (then called GRID) patients with neurological problems. (Note the iconoclastic element to Lipkin that showed up early in his career: he was willing to see patients others wouldn’t see. Check out Lipkin’s fascinating story of how HIV/AIDS lead to him to study infectious diseases.)

Lipkin then worked on a virus which demonstrated the effects a persistent viral infection can have on the central nervous system. The virus alters how nerve cells work but doesn’t kill them.

Next, in another story with possible overtones for chronic fatigue syndrome (ME/CFS), he investigated patients who’d come down with what appeared to be a mysterious psychiatric disorder. It took him two years but using a new method involving genetic cloning he uncovered the Borna disease virus. It was the first virus discovered using genetic means.

The Borna virus discovery was a game-changer for pathogen community.
Jump forward thirty years (after it took the medical community almost three years to find HIV) and viruses are being discovered using molecular means all the time. The Center for Infection and Immunity itself discovered 700 new viruses from 2009-2015.

Lipkin was aware of and interested in ME/CFS in the eighties but there was no money. In 1999 he and Britta Evangaard found no evidence of the Borna disease virus in ME/CFS. From there we jump forward to 2010 when NIH Director Francis Collins tasked Lipkin to determine if a retrovirus, XMRV, was present. XMRV turned out to be a laboratory artifact, and the paper was retracted – something that Lipkin said was not all that unusual in science. (He emphasized that he and Dr.
Peterson were very careful to put out studies that would stand the test of time.)

The XMRV discovery tanked but proved to be a boon for ME/CFS by heightening the attention around it. Lipkin had kept an eye on ME/CFS for years and after being hired by the Chronic Fatigue Initiative to take it on, he was back in a big way.

In the next portion of his talk he turned to viruses and humans.

Viruses and Humans

How are most viruses getting into humans? From animals. After it’s jump from primates to humans, HIV is, of course, the most familiar example, but viruses are also escaping from bats, birds, pigs, rodents, insects and even camels into humans.

A sea change in the viral field occurred in 1999 when a mosquito-borne virus – the West Nile Virus – was so bold as to attack the residents of the New York. Lipkin shifted his work from the West to East coasts and ultimately identified the virus. As the outbreak spread, it got the attention of Senator Joesph Lieberman who sponsored the first big initiative to learn how viruses spread from animals to humans.  Politicians, Lipkin said, can be very important allies.

If viruses are going to get spread around the world, New York City may very well be the best place to do that. Twenty-one million passengers traveling to and from 72 countries pass through New York airports every year. Animal products including bushmeat – all potentially contaminated with nasty viruses – pour into New York City regularly.

How many viruses remained to be discovered? A survey of one species of bats found fifty-five viruses, fifty of which were new to science.
Lipkin estimated 320,000 viruses were still unknown. He then covered virus’ able to escape from bats, ticks  and rats into humans.

Bats – Called in to investigate an ill Saudi Arabian man (with four wives), he uncovered a new virus called MERS (Middle East respiratory syndrome coronavirus) which was similar to those found in bats. (Asked if there were any bats in the area, he was told no. The next video showed bats flying every which way in the area :)). If the bats weren’t biting the humans, though, how was the bat virus jumping into people?

MERS appears to have been present in bats for quite some time. It spread to camels in the 1990’s and then jumped from camels to humans around 2010.

MERS is not particularly easy to transmit but when it gets transmitted, watch out. Death rates are high. It took one Saudi Arabian to spread MERS to South Korea this year where it killed several dozen people, put several thousand into quarantine and basically threw the country into a panic. Schools were closed, tourists stopped coming, and parts of the economy slumped as South Korea fought off the virus. MERS is the kind of virus that keeps public health officials up at night.

It’s not surprising that Lipkin is wary of pathogens. He noted that he rarely shakes hands but darting a glance at Dr. Peterson said he’d made an exception that evening. (If you haven’t seen Steven Soderbergh film “Contagion” and can handle apocalyptic scenario’s you might want to give it a try. Lipkin consulted extensively on the movie which involved a worst-case scenario of a virus wiping out much of humanity. The film was praised for its scientific accuracy. (Spoiler alert – we do survive in the end :)).

Ticks –  Lipkin believes chronic Lyme patients who are not recovering from antibiotics probably got another infection from the ticks. Lipkin found that over 70% of the Ixodes scapularis ticks associated with Lyme disease carried at least one pathogen and 30% carried more than one in New York. Last year he identified a rhabdovirus (Long Island tick rhabdovirus) new not just to ticks but to science itself. A small survey suggested that 15% of residents may carry antibodies to the virus.

Rats- Lipkin’s study of New York City’s second most common resident – rats – revealed they carried an amazing array of pathogens including Escherichia coli, Clostridium difficile, and Salmonella enterica, Bartonella spp., Streptobacillus moniliformis, Leptospira interrogans, and Seoul hantavirus.

Lipkin is understandably wary of pathogens. He noted that he rarely shakes hands but darting a glance at Dr. Peterson said he’d made an exception that evening.

Later Lipkin referred to the hamburger and French fries lunch that he and Peterson usually have saying do as we say not as we do. How does Lipkin reportedly like his meat? “Burn it” he tells the waiter. The man is taking no chances – he knows too much.

Infection and Disease

A pathogen is just one of the players, however, in a vast swirl of factors which ultimately determines whether one is going to have a chronic illness. Timing, for instance, is a key factor. If you expose a mouse to a pathogen at one stage of pregnancy, it’ll stop moving around its cage. If you expose the same mouse to the same pathogen later in pregnancy, it will run round and around its cage unceasingly.

A large autism study underscored the complex role timing plays. The 120,000 person autism birth cohort study found that if a mother comes down with a fever after the first trimester, her chances of giving birth to a son with autism go up three-fold.  If she treats the fever with acetaminophen, her chances of giving birth to an autistic child drop significantly.  If she takes acetaminophen for any other problem than a fever, her risk of giving birth to an autistic child goes up again.

Three to Five Years – An ME/CFS Timeline

How does all this relate to ME/CFS? Likpin cited the findings of their work to date.

  • The suspected pathogens don’t appear to be the problem (the CII is reportedly looking further at herpesviruses.)
  • Evidence suggests altered microbiomes (gut flora) are present
  • Striking differences in immune expression between shorter and longer duration patients appear to be present
  • Preliminary evidence suggests that levels “X” and “Y” metabolites and, at least, one immune protein are significantly altered in ME/CFS.
    (Lipkin embargoed this information pending publication of the paper.
    One of them is highly unusual.)

Lipkin emphasized, though, that ME/CFS is not a one-size fits all disease. For instance, it’s possible that fungi may be a problem for some patients. That’s an intriguing idea given the recent fungi funding in Alzheimer’s disease published in Nature.

Then Lipkin made his bold declaration “We’re going to solve this in three to five years”, with a big proviso. Provided the resources are made available, he believes science can crack ME/CFS fairly quickly.  That sounds really fast, but Lipkin’s time-frame is not that far off from Ronald Davis’s 5-10 time-frame (provided he gets the resources as
well.) (or Dr. Montoya’s).

These eminent researchers believe that given the technology present today we could understand ME/CFS fairly quickly – if enough resources were brought to bear.  Lipkin pointed to a slate of researchers in his lab working on ME/CFS to signify the major shift that’s occurred. He said “I couldn’t have gotten them five years ago”.

He highlighted two places the patient community can make an impact:

  • Funding Pilot Studies –   The community can fund pilot studies
    which can be turned into big grants
  • Advocacy – Lipkin is a savvy researcher. He knows how the NIH works and once again he emphasized the need for the ME/CFS community to push harder legislatively – to talk to their representatives in the House of Representatives, in particular – and get them to push the NIH for more funding.

Lipkin’s Bucket List

Ian Lipkin has clearly developed a special relationship with ME/CFS, Dr. Peterson, the Simmaron Research Institute. He hadn’t been in the Lake Tahoe area for decades, yet he and two of his assistants had flown across the country to support the Simmaron Research Institute’s spinal fluid work. He was even shaking hands.

I shook my head – not for the first time – about Lipkin. How had we gotten so lucky? Lipkin oversees the work of 65 researchers in the U.S. and 150 more across the globe. The New York Times reported that on any given day his lab had 140 viral research projects underway. The head of the National Institute of Allergy and Infectious Disease, Anthony Fauci said, “Lipkin really stands out from the crowd.”

Yet, here he was in Truckee in mid-December exhorting the audience to support an important Simmaron study that he believed needed funding.

What had driven the “The World’s Most Celebrated Virus Hunter” to take on our disease? I asked his assistants. They told me that Ian Lipkin wants to do two things more than anything else before he retires: he wants to solve ME/CFS, and he wants to solve autism. We’re on his bucket list.

That floored me even more (:)) so I asked – but, but…..doesn’t  he care what other people think about this neglected disease? That question left them almost gasping for breath. After they had been able to calm down, they assured me: no he doesn’t.

The Simmaron Research Foundation’s Next Spinal Fluid Study

Lipkin was at the event to support the Simmaron Research Institute’s next spinal fluid study. The results of the first one – the most extensive spinal fluid study ever done in ME/CFS – were eye-opening. A comparison to multiple sclerosis (MS) found evidence of immune dysregulation almost equal to that found in MS. The difference was that instead of being raised, the cytokine levels were reduced in ME/CFS.

For more on the Peterson’s subsets and Lipkin and Hornig’s Simmaron Work

That finding surely left a big smile on Lipkin’s and Hornig’s faces.
Earlier they had found evidence of a profound reduction in immune functioning in the blood of later-duration ME/CFS patients. Now a similar reduction was found in their spinal fluid. Having findings in two different systems match has rarely happened in ME/CFS. That suggested they were uncovering system-wide problems.

No wonder Lipkin was eager to begin a new and larger spinal fluid study. It’s part of achieving his bucket list.

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CFS and Epstein Barr virus in one clinical case

Research abstract:

Background: Chronic Fatigue Syndrome (CFS) is a complex illness with different clinical definition, etiological models and treatments. A lot of studies have focused on the concomitance with herpesviridae infections, especially Epstein-Barr Virus (EBV). We report a clinical case highlighting the correlation between chronic EBV infection and CFS.

Results: The patient met the CDC criteria for the diagnosis of CFS and presented a high level of EBV-DNA in blood.

Conclusions: Although some studies suggest that subjects with viral infections are not more likely to develop CFS than controls, the possible connection between EBV and CFS remains unclear. EBV-DNA shows the presence of an actively replicating virus, which is known to be associated with several cancers. Whether its replication is the cause or the consequence of CSF needs further investigations.

Chronic fatigue syndrome and chronic EBV infection: a long-term challenge in a single clinical case, by  V. Fiore, P. Bagella, F. Peruzzu, G. Caruana, S. Zaru, M.S. Mura in Infect Dis Trop Med 2015; 1 (4): E184

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PACE trial didn’t prove graded exercise safe for CFS say Tuller & Rehmeyer

Journalists Julie Rehmeyer and Dr. David Tuller have published an analysis concluding that the PACE trial failed to demonstrate the safety of graded exercise therapy, despite its authors claiming that it was a safe treatment for patients with chronic fatigue syndrome (CFS).

ME Action summary: Rehmeyer and Tuller: PACE trial didn’t prove graded exercise safe for CFS

Trial By Error, Continued: Did the PACE Trial Really Prove that Graded Exercise Is Safe? by Julie Rehmeyer and David Tuller, in Virology Blog,  7 January 2016

Julie Rehmeyer is a journalist and Ted Scripps Environmental Journalism Fellow at the University of Colorado, Boulder, who has written extensively about ME/CFS.

David Tuller is academic coordinator of the concurrent masters degree program in public health and journalism at the University of California, Berkeley.

Joining me for this episode of our ongoing saga is my friend and colleague Julie Rehmeyer. In my initial series, I only briefly touched on the PACE trial’s blanket claim of safety. Here we examine this key aspect of the study in more detail, which is complicated and requires a deep dive into technicalities. Sorry about that, but the claim is too consequential to ignore.

One of the most important and controversial claims from the PACE Trial was that graded exercise therapy is safe for patients with chronic fatigue syndrome (or ME/CFS, as U.S. government agencies now call it).

“If this treatment is done by skilled people in an appropriate way, it actually is safe and can stand a very good chance of benefiting [patients],” Michael Sharpe, one of the principal PACE investigators, told National Public Radio in 2011, shortly after The Lancet published the first results.

But to many in the ME/CFS community, this safety claim goes against the very essence of the disease. The hallmark of chronic fatigue syndrome, despite the name, is not actually fatigue but the body’s inability to tolerate too much exertion — a phenomenon that has been documented in exercise studies. All other symptoms, like sleep disorders, cognitive impairment, blood pressure regulation problems, and muscle pain, are exacerbated by physical or mental activity. An Institute of Medicine report in 2015 even recommended that the illness be renamed to emphasize this central problem, choosing the name “systemic exertion intolerance disease,” or SEID.

A careful analysis shows that the PACE researchers’ attempts to prove safety were as flawed as their attempts to prove efficacy. However, while the trial reports gave enough information to establish that the treatments were not effective (in spite of the claims of success and “recovery”), they did not give enough information to establish whether they were safe (also in spite of their claims). We simply do not know.

“I would be very skeptical in recommending a blanket statement that GET is safe,” says Bruce Levin, a biostatistician at Columbia University, who has reviewed the PACE trial and found other methodological aspects indefensible. “The aphorism that absence of evidence is not evidence of absence applies here. There is real difficulty interpreting these results.”

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Assessing the PACE team’s safety claims is critical, because the belief that graded exercise is safe has had enormous consequences for patients. In the UK, graded exercise therapy is recommended for all mild to moderate ME/CFS patients by the National Institute for Health and Care Excellence, which strongly influences treatment across the country. In the US, the Centers for Disease Control and Prevention also recommends graded exercise.

Exertion intolerance—also called “post-exertional malaise”—presents ME/CFS patients with a quandary: They want to do as much as they can when they’re able, while not doing so much that they make themselves sicker later. Among themselves, they’ve worked out a strategy to accomplish that, which they call “pacing.” Because their energy levels fluctuate, they carefully monitor how they are feeling and adapt their activities to stay within the day’s “energy envelope.”  This requires sensitive attunement to their symptoms in order to pick up on early signs of exacerbation and avoid exceeding their limits.

But according to the hypothesis behind the PACE study, this approach is all wrong. Because the investigators believe physical deconditioning rather than an organic disease perpetuated the many symptoms, they theorized that the key to getting better was to deliberately exceed current limits, gradually training the body to adapt to greater levels of activity. Rather than being sensitively attuned to symptoms, patients should ignore them, on the grounds that they have become obsessed about sensations most people would consider normal. Any increase in symptoms from exertion was explained as expected, transient and unimportant—the result of the body’s current state of weakness, not an underlying disease.

Many patients in the UK have tested this theory, since graded exercise therapy, or GET, is one of the few therapies available to patients there. And patient reports on the approach are very, very bad. In May 2015, the ME Association, a British charity, released a survey of patients’ experiences with GET, cognitive behavioral therapy, and pacing. The results suggested that GET was far and away the most dangerous. Of patients who received GET, 74 percent said that it had made them worse. In contrast, 18 percent said they were worse after cognitive behavior therapy and only 14 percent after pacing.

The survey is filled with reports similar to this one: “My condition deteriorated significantly, becoming virtually housebound, spending most of my day in bed in significant pain and with extreme fatigue.”

Anecdotal reports, however, don’t provide the proof of a randomized clinical trial. So this was one of the central issues at stake in the PACE study: Is it safe for patients to increase their activity on a set schedule while ignoring their symptoms?

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In the 2011 Lancet article with the first PACE results, the researchers reported that eight percent of all participants experienced a “serious deterioration” and less than two percent experienced a “serious adverse reaction” over the course of the year, without significant differences between the arms of the trial.

For patients to have a “serious deterioration,” their physical function score needed to drop by at least 20 points and they needed to report that their overall health was “much worse” or “very much worse” at two consecutive assessment periods (out of a total of three).

To have a “serious adverse reaction,” the patient needed to experience a persistent “severe, i.e. significant deterioration,” which was not defined, or to experience a major health-related event, such as a hospitalization or even death. Furthermore, a doctor needed to determine that the event was directly caused by the treatment—a decision that was made after the doctor was told which arm of the trial the patient was in.

Subsequent “safety” results were published in a 2014 article in the Journal of Psychosomatic Research. And this paper revealed a critical detail unmentioned in the Lancet paper: the six centers around England participating in the study appear to have applied the methods for assessing safety differently. That raises questions about how to interpret the results and whether the overall claims of “safety” can be taken at face value.

Beyond that issue, a major problem with the PACE investigators’ reporting on harms from exercise is that it looks as though participants might not have actually done much exercise. While the researchers stated the ambitious goal that participants would exercise for at least 30 minutes five times a week, they gave no information on how much exercise participants in fact did.

The trial’s objective outcomes suggest it may not have been much. The exercise patients were only able to walk 11 percent further in a walking test at the end of the trial than patients who hadn’t exercised. Even with this minimal improvement, participants were still severely disabled, with a poorer performance than patients with chronic heart failure, severe multiple sclerosis, or chronic obstructive pulmonary disorder.

On top of that, almost a third of those in the exercise arm who finished other aspects of the trial never completed the final walking test; if they couldn’t because they were too sick, that would skew the results. In addition, the participants in GET showed no improvement at all on a step test designed to measure fitness. Presumably, if the trial’s theory that patients suffered from deconditioning was correct, participants who had managed to exercise should have become more fit and performed better on these tests.

Tom Kindlon, a long-time patient and an expert on the clinical research, suggests that even if those in the exercise arm performed more graded exercise under the guidance of trial therapists, they may have simply cut back on other activities to compensate, as has been found in other studies of graded activity. He also notes that the therapists in the trial were possibly more cautious than therapists in everyday practice.

“In the PACE Trial, there was a much greater focus on the issue of safety [than in previous studies of graded activity], with much greater monitoring of adverse events,” says Kindlon, who published an analysis of the reporting of harms from trials of graded activity in ME/CFS, including PACE. “In this scenario, it seems quite plausible that those running the trial and the clinicians would be very cautious about pushing participants to keep exercising when they had increased symptoms, as this could increase the chances the patients would say such therapies caused adverse events.”

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Had the investigators stuck to their original plan, we would have more evidence to evaluate participants’ activity levels.  Originally, participants were going to wear a wristwatch-sized ankle band called an actometer, similar to a FitBit, that would measure how many steps they took for a week at the beginning of the trial and for a week at the end.

A substantial increase in the number of steps over the course of the trial would have definitively established both that participants were exercising and that they weren’t decreasing other activity in order to do so.

But in reviewing the PACE Trial protocol, which was published in 2007, Kindlon noticed, to his surprise, that the researchers had abandoned this plan. Instead, they were asking participants to wear the actometers only at the beginning of the trial, but not at the end. Kindlon posted a comment on the journal’s website questioning this decision. He pointed out that in previous studies of graded activity, actometer measurements showed that patients were not moving more, even if they reported feeling better. Hence, the “exercise program” in that case in fact did not raise their overall activity levels.

In a posted response, White and his colleagues explained that they “decided that a test that required participants to wear an actometer around their ankle for a week was too great a burden at the end of the trial.” However, they had retained the actometer as a baseline measure, they wrote, to test as “a moderator of outcome”—that is, to determine factors that predicted which participants improved. The investigators also noted that the trial contained other objective outcome measures. (They subsequently dismissed the relevance of these objective measures after they failed to demonstrate efficacy.)

That answer didn’t make sense to Kindlon. “They clearly don’t find it that great a burden that they drop it altogether as it is being used on patients before the start,” he wrote in a follow-up comment. “If they feel it was that big of a burden, it should probably have been dropped altogether.”

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The other major flaws that make it impossible to assess the validity of their safety claims are related to those that affected the PACE trial as a whole.  In particular, problems related to four issues affected their methods for reporting harms: the case definition, changes in outcome measures after the trial began, lack of blinding, and encouraging participants to discount symptoms in a trial that relied on subjective endpoints.

First, the study’s primary case definition for identifying participants, called the Oxford criteria, was extremely broad; it required only six months of medically unexplained fatigue, with no other symptoms necessary. Indeed, 16% of the participants didn’t even have exercise intolerance—now recognized as the primary symptom of ME/CFS—and hence would not be expected to suffer serious exacerbations from exercise. The trial did use two additional case definitions to conduct sub-group analyses, but they didn’t break down the results on harms by the definition used. So we don’t know if the participants who met one of the more stringent definitions suffered more setbacks due to exercise.

Second, after the trial began, the researchers tightened their definition of harms, just as they had relaxed their methods of assessing improvement. In the protocol, for example, a steep drop in physical function since the previous assessment, or a slight decline in reported overall health, both qualified as a “serious deterioration.” However, as reported in The Lancet, the steep drop in physical function had to be sustained across two out of the trial’s three assessments rather than just since the previous one. And reported overall health had to be “much worse” or “very much worse,” not just slightly worse. The researchers also changed their protocol definition of a “serious adverse reaction,” making it more stringent.

The third problem was that the study was unblinded, so both participants and therapists knew the treatment being administered. Many participants were probably aware that the researchers themselves favored graded exercise therapy and another treatment, cognitive behavior therapy, which also involved increasing activity levels. Such information has been shown in other studies to lead to efforts to cooperate, which in this case could lead to lowered reporting of harms.

And finally, therapists were explicitly instructed to urge patients in the graded exercise and cognitive behavioral therapy arms to “consider increased symptoms as a natural response to increased activity”—a direct encouragement to downplay potential signals of physiological deterioration. Since the researchers were relying on self-reports about changes in functionality to assess harms, these therapeutic suggestions could have influenced the outcomes.

“Clinicians or patients cannot take from this trial that it is safe to undertake graded exercise programs,” Kindlon says. “We simply do not know how much activity was performed by individual participants in this trial and under what circumstances; nor do we know what was the effect on those that did try to stick to the programs.”

 

 

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